Download input and output for examples

Example 1: K562 E2f4 vs. E2f6 (96 seqs)

Download E2f4 input file (fasta format)
Download E2f6 input file (fasta format)
Preview Download Output files – PBM data from UniPROBE
Preview Download Output files – PWMs from UniPROBE & HT-SELEX & JASPAR CORE vertebrata

Example 2: K562 c-Myc vs. Mxi1 (538 seqs)

Download c-Myc input file (fasta format)
Download Mxi1 input file (fasta format)
Preview Download Output files – PBM data from UniPROBE
Preview Download Output files – PWMs from UniPROBE & HT-SELEX & JASPAR CORE vertebrata

Example 3: K562 Atf1 vs. Atf3 (600 seqs)

Download Atf1 input file (fasta format)
Download Atf3 input file (fasta format)
Preview Download Output files – PBM data from UniPROBE
Preview Download Output files – PWMs from UniPROBE & HT-SELEX & JASPAR CORE vertebrata

Download COUGER

COUGER Version 1.8.2 Download (June 2015)

COUGER Version 1.8.1 Download - fixed narrow peak files validation (April 2015)

COUGER Version 1.8 Download (April 2014)


Download features frequencies

Preview Download Selection frequencies of PBM and PWM features
in replicates comparisons (Rep1-Rep2) and in paralogous TFs comparisons (TF1-TF2)